Characterization of Inner Cavity Lining of Proteins

Download Standalone Version

For UCSF-Chimera


To load the script: Open the file with inner-residues marked. Go to favorites and open the command line
In the command line, type "open "path to com file""


You can download the desired com file from the below links

Visualize Atoms
Visualize Ribbons

For PYMOL


To load the script: Open the file with inner-residues marked in PYMOL
In the command line just above theh visualizer, type "@(path to the pml file)"
For example, to use a.pml located in the same folder as the pdb, type @a.pml in the command line


You can download the desired com file from the below links

Visualize Atoms
Visualize Ribbons